Advanced Pipeline Development

Subject

This advanced Viash course enhances your skills in parameterization, templating, and workflow composition, and teaches integration with the Nextflow scientific computing workflow management system.

Target Audience

• Computational Researchers
• Bioinformaticians
• IT Developers

Location

Online

Course Overview

Module 1: Advanced Concepts in Data Pipeline Architecture

• Review of Pipeline Fundamentals
• Complex Pipeline Architectures

Module 2: Deep Dive into Viash Functionality

• Advanced Features of Viash
• Custom Components and Modularity

Module 3: Integrating Diverse Data Types and Sources

• Handling Heterogeneous Data
• Data Source Integration

Module 4: Pipeline Optimization and Performance Tuning

• Performance Analysis
• Optimization Techniques

Module 5: Automation and Continuous Integration/Continuous Deployment (CI/CD)

• Automating Pipeline Processes
• Implementing CI/CD in Pipeline Development

Module 6: Case Studies and Real-World Applications

• Complex Use Cases
• Industry and Research Application

Objectives

• Advance participants’ understanding and skills in complex data pipeline development.
• Provide deep insights into the optimization and management of high-performance pipelines in bioinformatics.
• Equip participants with the ability to integrate advanced tools and techniques into their pipeline development processes.

Required skills

• A solid foundation in data pipeline development with Viash and a good understanding of bioinformatics, data analysis, and scripting languages. Prior experience with pipeline development with Viash, is highly recommended.

Conclusion:

Participants of the “Advanced Data Pipeline Development” course will emerge with a profound expertise in creating, optimizing, and managing sophisticated data pipelines. They will gain practical knowledge in handling complex data types, integrating advanced features, and implementing automation and CI/CD in pipeline workflows. This course is aimed at empowering professionals to tackle the most challenging aspects of data pipeline development in the evolving field of bioinformatics and biotechnological research.

Trainers

• Robrecht Cannoodt
• Toni Verbeiren

Program

-

- - Online

500,00 € taxes excluded

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