Target Audience
- Computational Researchers
- Bioinformaticians
- IT Developers
Location
Online
Course Overview
Module 1: Introduction to data pipelines in biotechnology
- Basics of data processing workflows
- Challenges in traditional pipeline development
Module 2: Getting started
- Overview of Viash
- Overview of Viash Hub
- Installing and configuring Viash
Module 3: Building Bioinformatics Modules with Viash
- Creating basic bioinformatics modules
- Advanced features of Viash modules
- Debugging and optimizing bioinformatics modules
Module 4: Integration and deployment
- Integration of Viash modules with Nextflow workflows
- Pipeline version control and management
- Deployment strategies
Module 5: Advanced topics and case studies
- Automating and scaling pipelines
- Real-world applications
- Contributing to Viash Catalogue
Objectives
- Comprehensive overview about data pipeline development in the context of bioinformatics.
- Hands-on experience with creating, managing, and optimizing pipelines using Viash.
- In-depth understanding of the integration of Viash pipelines with other tools and platforms.
Required Skills
Participants should have a foundational understanding of bioinformatics and data analysis, along with basic knowledge of scripting languages. Familiarity with the concepts of data pipelines is advantageous but not mandatory.
Key Take-Aways
Upon completing this course, participants will be adept at developing and managing efficient and scalable data pipelines using Viash. They will gain practical skills and insights into advanced pipeline development strategies, preparing them to tackle complex data processing challenges in their respective fields of research. This course is a step towards empowering researchers and professionals with the tools and knowledge needed to innovate and excel in the dynamic landscape of bioinformatic data processing.
Trainers
- Robrecht Cannoodt, CTO
- Toni Verbeiren, CEO
Program
and
- - Online
400,00 € taxes excluded
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