Target Audience
- Managers
- Biologists
- Computational Researchers
- Bioinformaticians
- IT Developers
Location
Online
Course Overview
Module 1: Bottlenecks and Solutions in Biotech Data Processing
- Introduction to data workflows in biotechnology
- Overview of bottlenecks in traditional workflow development
- Benefits of adopting the Viash-built Nextflow workflow approach
Module 2: Introduction to Viash-built Nextflow workflows
- Viash Hub: the bioinformatics package manager and workflow management platform
- Overview of the extensive Viash Catalogue of open-source pipelines
- Viash: the engine for Nextflow workflow development
Module 3: Set-up for running data workflows
- Understanding and preparing datasets
- Configuring pipeline inputs and outputs
- Executing workflows locally and on cloud platforms
- Running Data workflows with Viash Hub
Module 4: Hands-on training for running data workflows
- Dataset integration in pipeline execution
- Running pipelins locally with small datasets
- Running pipelines at scale with Seqera Cloud (former NF-Tower)
- Running pipelines locally or on the Seqera Cloud using Viash Hub
Objectives
- Get an in-depth understanding of our approach to data processing workflows and its significance in modern biotechnological research.
- Gain practical skills to effectively utilize and managing existing data pipelines to process datasets locally or in the cloud with Viash Hub.
- Gain practical skills with the batteries-included approach of Viash-built Nextflow workflows through hands-on experience and case studies.
Required skills
Understanding of bioinformatics pipelines: participants should have a foundational knowledge of the role and context of bioinformatics pipelines in research and development (R&D) environments. This includes an awareness of how these pipelines are integral to processing and analyzing biological data, and their significance in advancing scientific discoveries and innovations in biotechnology.
Key Take-Aways
Upon completion, participants will have a comprehensive understanding of the key advantages of our approach, proficiency in running and managing existing data pipelines in the Viash Catalogue, and insights into leveraging the Viash Hub platform for collaborative and efficient research endeavors. This course aims to empower researchers with the tools and knowledge to navigate the evolving landscape of biotechnological data processing with confidence.
Trainers
- Robrecht Cannoodt, CTO
- Toni Verbeiren, CEO
Program
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- - Online
200,00 € taxes excluded
- Our general terms and conditions apply to all contracts and courses.