All courses Workflow Academy · Course 01 · Beginner

Running pipelines on the platform

Pick a validated pipeline from the catalogue. Configure a run. Read the report. Hands-on, no coding required.

Course overview

What you will cover

Four modules, four hours total, with hands-on labs throughout.

Module 01

Platform tour

What the platform does and who it is for
Navigating the catalogue, runs, projects and reports
Roles, permissions and team workspaces

Module 02

Picking the right pipeline

Browsing the validated pipeline catalogue
Matching pipelines to assays, kits and instruments
Reading pipeline metadata, version history and validation status

Module 03

Configuring and launching a run

Preparing your input data and reference files
Setting parameters and selecting compute targets
Launching a run and monitoring progress

Module 04

Reading reports and sharing results

Interpreting QC metrics and summary statistics
Working with interactive reports and visualisations
Downloading outputs and sharing with collaborators
Where audit trails live and how to access them

Objectives

What you will achieve

Launch a validated pipeline on the platform without writing code.
Pick the right pipeline for your assay and read its validation status.
Interpret QC, summary statistics and the audit trail.

Key take-aways

By the end of the course

You can run analyses on the platform end to end. From picking the right pipeline through to delivering an audit-ready report. No coding, no waiting on a bioinformatics queue.

Required skills

Before you start

A working understanding of the assays you run and the data they produce. No coding or bioinformatics background required.

Trainers

Led by

Data Intuitive bioinformatics teamWorking bioinformatics engineers

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